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stenl

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A Quest into the Human Brain

science.org
1 points·by stenl·3 года назад·0 comments

A comprehensive census of brain cell types

science.org
1 points·by stenl·3 года назад·1 comments

comments

stenl
·3 месяца назад·discuss
My group published a cell atlas of the developing human brain in 2023, giving gene expression in single cells from postconception week 5 to 13. It’s on github: https://github.com/linnarsson-lab/developing-human-brain

The NIH BRAIN initiative is working on the next generation of that, covering more timepoints and better spatial data.
stenl
·9 месяцев назад·discuss
He was not head of state when the crime was committed and he is not head of state now.
stenl
·12 месяцев назад·discuss
If, like me, you wanted to see the actual farthest distance photo, here it is: https://beyondrange.wordpress.com/
stenl
·в прошлом году·discuss
The average federal tax rate is 14%, and the USAID budget was about 0.8% of the federal budget, so you’ve been paying about a 0.1% tax to fund USAID.
stenl
·в прошлом году·discuss
A much more detailed and thoughtful (and peer reviewed) take on the same question from my colleague Jussi Taipale: https://www.embopress.org/doi/full/10.15252/embj.201696114
stenl
·2 года назад·discuss
Cool! Has anything similar been attempted in tumor tissue, given the many claims of microbes in tumors? Especially tumors not in contact with the exterior.
stenl
·2 года назад·discuss
And further down: ” Contributions

J.J. and D.H. led the research. J.J., R.E., A. Pritzel, M.F., O.R., R.B., A. Potapenko, S.A.A.K., B.R.-P., J.A., M.P., T. Berghammer and O.V. developed the neural network architecture and training. T.G., A.Ž., K.T., R.B., A.B., R.E., A.J.B., A.C., S.N., R.J., D.R., M.Z. and S.B. developed the data, analytics and inference systems. D.H., K.K., P.K., C.M. and E.C. managed the research. T.G. led the technical platform. P.K., A.W.S., K.K., O.V., D.S., S.P. and T. Back contributed technical advice and ideas. M.S. created the BFD genomics database and provided technical assistance on HHBlits. D.H., R.E., A.W.S. and K.K. conceived the AlphaFold project. J.J., R.E. and A.W.S. conceived the end-to-end approach. J.J., A. Pritzel, O.R., A. Potapenko, R.E., M.F., T.G., K.T., C.M. and D.H. wrote the paper.”
stenl
·2 года назад·discuss
These cells won’t divide because they will fail to replicate their DNA due to the lack of thymidine. The use case is cell therapies, where you give the patient cells grown in the lab but you don’t want those cells to potentially divide and cause cancer. For example, CAR T therapy to treat cancer, or dopaminergic neuron replacement therapy for Parkinson’s disease.
stenl
·2 года назад·discuss
TERT activation is one of the most common alterations causing cancer. In fact, the whole point of the normally very low TERT expression in somatic cells is likely to be cancer prevention. It’s the mechanism behind the Hayflick limit, which puts a bound on the max number of divisions a cell can go through, via telomere shortening. Without such a limit, you get cancer. I highly doubt it will make you live longer.
stenl
·2 года назад·discuss
Freezing and thawing organoids is not new, it’s fairly routine. The frozen piece of brain from an epilepsy patient doesn’t retain ”normal function”. There is no evidence in the paper that it integrates into neuronal circuits (this was not even tested), or supports anything like normal neuronal firing. The cells are alive, yes, and likely highly abnormally perturbed.
stenl
·2 года назад·discuss
”The Emperor of all Maladies” by Siddhartha Mukherjee is fantastic
stenl
·3 года назад·discuss
Related: Dijkstra, ”Why numbering should start at zero”

https://www.cs.utexas.edu/users/EWD/transcriptions/EWD08xx/E...
stenl
·3 года назад·discuss
No that would be amazing. But we don’t have the technology to map all the connections in large mammalian brains. It was done in the fruitfly just this year: https://www.science.org/doi/10.1126/science.add9330
stenl
·3 года назад·discuss
None, that was done 100 years ago, e.g. by Ramon y Cajal (Nobel prize 1906). But microscopic detail does not give molecular detail. What these current studies add is data on gene expression (mRNA molecules), chromatin accessibility (related to gene regulation), electrophysiology (in some cases), etc. We need such detail to connect disease genes inferred from genetics to specific brain cell types, for example.
stenl
·3 года назад·discuss
Papers are paywalled but most can be found on bioRxiv, e.g. https://www.biorxiv.org/content/10.1101/2022.10.12.511898v1
stenl
·3 года назад·discuss
That’s not a terrible summary of the one paper, but there are 20 more papers. An overview by the Science editor: https://www.science.org/doi/full/10.1126/science.adl0913

The full collection of papers is linked here: https://news.ycombinator.com/item?id=37878935

They are paywalled, but most are available as preprints on bioRxiv, e.g. https://www.biorxiv.org/content/10.1101/2022.10.12.511898v1