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Thebroser

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Executive Order on the Safe, Secure, and Trustworthy Development and Use of AI

whitehouse.gov
4 points·by Thebroser·2 yıl önce·0 comments

A universal deep-learning model for zinc finger design

nature.com
1 points·by Thebroser·3 yıl önce·0 comments

Large Language Models Encode Clinical Knowledge

arxiv.org
2 points·by Thebroser·4 yıl önce·0 comments

PhD students face cash crisis with wages that don’t cover living costs

nature.com
236 points·by Thebroser·4 yıl önce·233 comments

comments

Thebroser
·geçen yıl·discuss
The approach they used which is base editing doesn’t actually insert or remove DNA, it actually uses an enzyme to convert one base to another, which is much safer as this doesn’t require a double strand break in DNA: https://blog.addgene.org/single-base-editing-with-crispr
Thebroser
·geçen yıl·discuss
Add gene has a great guide as to what goes on at the molecular level: https://www.addgene.org/guides/crispr/

Essentially you can design an rna molecular that contains a 20 nucleotide long sequence that can target your region of interest, with the caveat that there is a standard recognition sequence proximal to your sequence of interest (PAM sequence)
Thebroser
·2 yıl önce·discuss
I used to love this chrome extension back in the day, unsure if it still works but same idea:

https://ottoplay.tv/
Thebroser
·2 yıl önce·discuss
Home lab, or even be able to sequence your genome at home, privately and securely without risking giving your genetic information to companies like 23andme
Thebroser
·3 yıl önce·discuss
There’s also people pursuing mRNA delivery systems to do this. Might be cheaper than viruses and there’s precedent now with COVID vaccines. https://www.capstantx.com/
Thebroser
·3 yıl önce·discuss
There are research groups that are trying to encode genetic neural networks into cells like the example I have attached, but the neuronal approach from the post does seem to be different here. https://www.nature.com/articles/s41467-022-33288-8
Thebroser
·3 yıl önce·discuss
Would probably assume some level of immunosuppressants might be necessary.
Thebroser
·3 yıl önce·discuss
There are definitely very solid attempts at least to make LLMs that encode biomedical knowledge such as BioGPT which is trained on Pubmed and other domain specific areas. Source: https://arxiv.org/abs/2210.10341
Thebroser
·3 yıl önce·discuss
Spatial Transcriptomics. Being able to see gene expression at a resolution of a handful of cells in a cross section of tissue is revolutionizing disease research. https://www.nature.com/articles/s41592-020-01033-y
Thebroser
·4 yıl önce·discuss
I am always fascinated by the ignorance that is blatantly displayed on HN when it comes to biotech advancements. Not even some actual criticism of the tech, or even the faint understanding that this sort of thing is exploratory research. Wonder why this sort of skepticism is never applied to cutting edge AI research whose ethical ramifications are much more severe and which is already being utilized by bad actors to facilitate genocide [1].

[1] https://wires.onlinelibrary.wiley.com/doi/abs/10.1002/widm.1...
Thebroser
·4 yıl önce·discuss
“Animal research has shown that natural cochlear hair cell regeneration and resultant hearing restoration is very real” - Although exciting, we also need to remember that translatability rates from animal models to humans is notoriously low, usually in the single digits for most therapeutic areas. This is some cool tech, but just wanted to point it out that success in animal models =/= we will eventually get to see the realized treatment.
Thebroser
·4 yıl önce·discuss
Thanks a ton for your reply! I wish you all the best, tons of cool innovation to be done here.
Thebroser
·4 yıl önce·discuss
Hey! Bioengineering background here, how do you all embed the cells within the scaffold? Is your approach similar to other bioprinting approaches (initial cells seeded via extrusion, inkjet, or laser assisted deposition)? At first I would think this could be done with some sort of printable collagen scaffold but I'm curious for what your approach would be. In addition, as someone that is involved in therapeutics, I'm not too well versed in this space but was curious hearing from your perspective: How close would you say we are to being able to use FBS free media to culture meat at scale?
Thebroser
·4 yıl önce·discuss
If you pick up an intro college level bio book that might be enough to start out with. My university publishes this so it would be a nice free start -> https://openstax.org/details/books/biology-2e

After that, you could maybe get interested into a anatomy/physiology or systems physiology textbook.

For more specialized content maybe NCBI StatPearls -> https://www.ncbi.nlm.nih.gov/books/NBK430685/

Note that due to the ever changing landscape of biology, only way to truly ever "be an expert" is to actively participate in the life sciences and keep up with contemporary research articles.
Thebroser
·4 yıl önce·discuss
The thing about these developmental conditions is that in theory there a lot of different treatment modalities that can be pursued at the embryonic level that could address these conditions (viral or non viral gene therapy, CRISPR based base deletions/insertions of the correct allele, etc.). However, once embryonic development has occurred and these conditions have manifested, it would be very difficult to alleviate them. Note that this is very different from something like sickle cell anemia. As a metaphor, think of the human body as a brick house. Using state of the art biotech to treat sickle cell anemia would be like trying to replace a leaky pipe hidden under concrete in the house. Yes it may be difficult but it is doable as it’s a fairy isolated issue. Trying to fix developmental diseases like KS would be like trying to replace every inch of the mortar in the brick house. It would be painstakingly difficult to do it right without the whole house collapsing. In summary, the tech you are referencing is basically limited to pre-developmental organisms, it needs decades or centuries to go before we may feasibly perform large scale genetic engineering that can undo post-developmental physiology.

Next, we have to understand that there are serious ethical considerations on treatments that target embryos. Biology is still very much a black box field. It is near impossible trying to factor in all the parameters in this problem space, especially when you are altering genes at a highly regulated stage of human development. Millions of model organisms like mice and non human primates are used to test therapies, but would we be willing to do the same to human embryos at such a large scale? I would hardly imagine an IRB approving research like this in my lifetime in the U.S.