Show HN: PyCirclize – Circular Visualization in Python(github.com)
github.com
Show HN: PyCirclize – Circular Visualization in Python
https://github.com/moshi4/pyCirclize
5 comments
This looks excellent for my use case, which is visualizing viroid and viroid-like circular genomes. Right now, I reluctantly use the R version but am eager to try this out. I spent countless hours making this figure [1] for my last paper and am quite confident that would have saved me a ton of time.
If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it. Thanks for sharing this tool!
[1] https://www.cell.com/cell/fulltext/S0092-8674(22)01582-3#gr4
If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it. Thanks for sharing this tool!
[1] https://www.cell.com/cell/fulltext/S0092-8674(22)01582-3#gr4
As you mentioned, pyCirclize can easily plot a circular genome map like the one in that paper.
> If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it.
I will consider it.
> If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it.
I will consider it.
Which R equivalent for circular plots did you use?
From the citation, it looks like circlize was used.
https://github.com/jokergoo/circlize
https://github.com/jokergoo/circlize
So nice! To be honest, I will struggle to find a use case for it in my work, but I will try. I work with graph data a lot; I just need too get creative.
I'd love to hear your feedback.
Document: https://moshi4.github.io/pyCirclize/